HL_6SKG_062

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUUCGUC

Length

7 nucleotides

Bulged bases

6SKG|1|BA|U|1461, 6SKG|1|BA|U|1465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_062 not in the Motif Atlas

Homologous match to HL_4V9F_035

Geometric discrepancy: 0.1481

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

6SKG|1|BA|G|1460
6SKG|1|BA|U|1461
6SKG|1|BA|U|1462
6SKG|1|BA|C|1463
6SKG|1|BA|G|1464
6SKG|1|BA|U|1465
6SKG|1|BA|C|1466

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain BV

50S ribosomal protein L22

Chain Bi

50S ribosomal protein L39e