HL_6SKG_064
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GUUUAUAUUC
- Length
- 10 nucleotides
- Bulged bases
- 6SKG|1|BA|U|1534, 6SKG|1|BA|U|1535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SKG_064 not in the Motif Atlas
- Homologous match to HL_4V9F_037
- Geometric discrepancy: 0.1404
- The information below is about HL_4V9F_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77449.2
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
6SKG|1|BA|G|1527
6SKG|1|BA|U|1528
6SKG|1|BA|U|1529
6SKG|1|BA|U|1530
6SKG|1|BA|A|1531
6SKG|1|BA|U|1532
6SKG|1|BA|A|1533
6SKG|1|BA|U|1534
6SKG|1|BA|U|1535
6SKG|1|BA|C|1536
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BS
- 50S ribosomal protein L19e
- Chain BW
- 50S ribosomal protein L23
- Chain Be
- 50S ribosomal protein L34e
- Chain Bi
- 50S ribosomal protein L39e
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