HL_6SKG_070

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGACACUG

Length

8 nucleotides

Bulged bases

6SKG|1|BA|A|1759, 6SKG|1|BA|A|1761, 6SKG|1|BA|U|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_070 not in the Motif Atlas

Homologous match to HL_4V9F_042

Geometric discrepancy: 0.1261

The information below is about HL_4V9F_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6SKG|1|BA|C|1757
6SKG|1|BA|G|1758
6SKG|1|BA|A|1759
6SKG|1|BA|C|1760
6SKG|1|BA|A|1761
6SKG|1|BA|C|1762
6SKG|1|BA|U|1763
6SKG|1|BA|G|1764

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BV

50S ribosomal protein L22

Chain Bh

50S ribosomal protein L37e

Chain Bi

50S ribosomal protein L39e