HL_6SKG_078

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGGUAACUAUAACCCU

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|G|2021
6SKG|1|BA|G|2022
6SKG|1|BA|G|2023
6SKG|1|BA|U|2024
6SKG|1|BA|A|2025
6SKG|1|BA|A|2026
6SKG|1|BA|C|2027
6SKG|1|BA|U|2028
6SKG|1|BA|A|2029
6SKG|1|BA|U|2030
6SKG|1|BA|A|2031
6SKG|1|BA|A|2032
6SKG|1|BA|C|2033
6SKG|1|BA|C|2034
6SKG|1|BA|C|2035
6SKG|1|BA|U|2036

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain Bp

Predicted exosome subunit, UPF0023 family