HL_6SKG_080

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCGCAUAUGC

Length

10 nucleotides

Bulged bases

6SKG|1|BA|C|2142, 6SKG|1|BA|A|2143, 6SKG|1|BA|U|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_080 not in the Motif Atlas

Homologous match to HL_4V9F_052

Geometric discrepancy: 0.2775

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

6SKG|1|BA|G|2139
6SKG|1|BA|C|2140
6SKG|1|BA|G|2141
6SKG|1|BA|C|2142
6SKG|1|BA|A|2143
6SKG|1|BA|U|2144
6SKG|1|BA|A|2145
6SKG|1|BA|U|2146
6SKG|1|BA|G|2147
6SKG|1|BA|C|2148

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain Bd

50S ribosomal protein L32e