HL_6SKG_083

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6SKG|1|BA|G|2352

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_083 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.1203

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6SKG|1|BA|C|2350
6SKG|1|BA|U|2351
6SKG|1|BA|G|2352
6SKG|1|BA|OMG|2353
6SKG|1|BA|G|2354
6SKG|1|BA|G|2355
6SKG|1|BA|C|2356
6SKG|1|BA|G|2357
6SKG|1|BA|G|2358

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L10e

Chain Bp

Predicted exosome subunit, UPF0023 family