HL_6SKG_089

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCCCGGUGG

Length

9 nucleotides

Bulged bases

6SKG|1|BA|C|2512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_089 not in the Motif Atlas

Homologous match to HL_4V9F_061

Geometric discrepancy: 0.2376

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6SKG|1|BA|C|2511
6SKG|1|BA|C|2512
6SKG|1|BA|C|2513
6SKG|1|BA|C|2514
6SKG|1|BA|G|2515
6SKG|1|BA|G|2516
6SKG|1|BA|U|2517
6SKG|1|BA|G|2518
6SKG|1|BA|G|2519

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain Bl

50S ribosomal protein L44e