HL_6SKG_090

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AGCCCA(4SU)AU

Length

9 nucleotides

Bulged bases

6SKG|1|BA|A|2580

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_090 not in the Motif Atlas

Homologous match to HL_4V9F_062

Geometric discrepancy: 0.1272

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6SKG|1|BA|A|2575
6SKG|1|BA|G|2576
6SKG|1|BA|C|2577
6SKG|1|BA|C|2578
6SKG|1|BA|C|2579
6SKG|1|BA|A|2580
6SKG|1|BA|4SU|2581
6SKG|1|BA|A|2582
6SKG|1|BA|U|2583

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L10e

Chain Bj

50S ribosomal protein L40e

Chain Bp

Predicted exosome subunit, UPF0023 family