HL_6SKG_091

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGCAGCAG

Length

8 nucleotides

Bulged bases

6SKG|1|BA|G|2633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_091 not in the Motif Atlas

Homologous match to HL_4V9F_063

Geometric discrepancy: 0.2548

The information below is about HL_4V9F_063

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6SKG|1|BA|U|2632
6SKG|1|BA|G|2633
6SKG|1|BA|C|2634
6SKG|1|BA|A|2635
6SKG|1|BA|G|2636
6SKG|1|BA|C|2637
6SKG|1|BA|A|2638
6SKG|1|BA|G|2639

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L6

Chain Bj

50S ribosomal protein L40e