HL_6SKG_092

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GG(OMU)GUUCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_092 not in the Motif Atlas

Homologous match to HL_4V9F_064

Geometric discrepancy: 0.2465

The information below is about HL_4V9F_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|G|2654
6SKG|1|BA|G|2655
6SKG|1|BA|OMU|2656
6SKG|1|BA|G|2657
6SKG|1|BA|U|2658
6SKG|1|BA|U|2659
6SKG|1|BA|C|2660
6SKG|1|BA|A|2661
6SKG|1|BA|C|2662

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BL

50S ribosomal protein L14

Chain Bp

Predicted exosome subunit, UPF0023 family