HL_6SKG_097

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAGAAGAC

Length

9 nucleotides

Bulged bases

6SKG|1|BA|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_097 not in the Motif Atlas

Homologous match to HL_4V9F_069

Geometric discrepancy: 0.1061

The information below is about HL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6SKG|1|BA|G|2945
6SKG|1|BA|A|2946
6SKG|1|BA|A|2947
6SKG|1|BA|G|2948
6SKG|1|BA|A|2949
6SKG|1|BA|A|2950
6SKG|1|BA|G|2951
6SKG|1|BA|A|2952
6SKG|1|BA|C|2953

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BV

50S ribosomal protein L22

Chain Bc

50S ribosomal protein L31e