HL_6SKG_106

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(5MC)UGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|5MC|1266
6SKG|1|Aa|U|1267
6SKG|1|Aa|G|1268
6SKG|1|Aa|C|1269
6SKG|1|Aa|A|1270
6SKG|1|Aa|A|1271
6SKG|1|Aa|C|1272
6SKG|1|Aa|U|1273
6SKG|1|Aa|C|1274
6SKG|1|Aa|G|1275

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S13

Chain Ar

30S ribosomal protein S14 type Z

Chain Au

30S ribosomal protein S19