HL_6SKG_110

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGUACAA(OMC)

Length

8 nucleotides

Bulged bases

6SKG|1|BA|A|1991

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_110 not in the Motif Atlas

Homologous match to HL_4V9F_049

Geometric discrepancy: 0.2629

The information below is about HL_4V9F_049

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_38635.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6SKG|1|BA|G|1988
6SKG|1|BA|G|1989
6SKG|1|BA|U|1990
6SKG|1|BA|A|1991
6SKG|1|BA|C|1992
6SKG|1|BA|A|1993
6SKG|1|BA|A|1994
6SKG|1|BA|OMC|1995

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Bl

50S ribosomal protein L44e