HL_6SKG_112

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAAAAGGUAUC(OMG)

Length

13 nucleotides

Bulged bases

6SKG|1|BA|A|2371, 6SKG|1|BA|C|2378

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|C|2367
6SKG|1|BA|G|2368
6SKG|1|BA|A|2369
6SKG|1|BA|A|2370
6SKG|1|BA|A|2371
6SKG|1|BA|A|2372
6SKG|1|BA|G|2373
6SKG|1|BA|G|2374
6SKG|1|BA|U|2375
6SKG|1|BA|A|2376
6SKG|1|BA|U|2377
6SKG|1|BA|C|2378
6SKG|1|BA|OMG|2379

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BJ

50S ribosomal protein L10e

Chain BU

50S ribosomal protein L21e