HL_6SKG_113

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(5MU)GCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_113 not in the Motif Atlas

Homologous match to HL_4V9F_058

Geometric discrepancy: 0.1941

The information below is about HL_4V9F_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6SKG|1|BA|5MU|2427
6SKG|1|BA|G|2428
6SKG|1|BA|C|2429
6SKG|1|BA|A|2430
6SKG|1|BA|A|2431
6SKG|1|BA|G|2432
6SKG|1|BA|G|2433
6SKG|1|BA|G|2434

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L10e

Chain BU

50S ribosomal protein L21e