HL_6SKG_114

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUCUCGUUUCGACCC

Length

15 nucleotides

Bulged bases

6SKG|1|BB|U|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_114 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.1982

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6SKG|1|BB|G|34
6SKG|1|BB|U|35
6SKG|1|BB|C|36
6SKG|1|BB|U|37
6SKG|1|BB|C|38
6SKG|1|BB|G|39
6SKG|1|BB|U|40
6SKG|1|BB|U|41
6SKG|1|BB|U|42
6SKG|1|BB|C|43
6SKG|1|BB|G|44
6SKG|1|BB|A|45
6SKG|1|BB|C|46
6SKG|1|BB|C|47
6SKG|1|BB|C|48

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S ribosomal protein L5

Chain BQ

50S ribosomal protein L18