HL_6SNT_003

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_003 not in the Motif Atlas

Homologous match to HL_5TBW_003

Geometric discrepancy: 0.1034

The information below is about HL_5TBW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6SNT|1|1|C|90
6SNT|1|1|G|91
6SNT|1|1|G|92
6SNT|1|1|C|93
6SNT|1|1|G|94
6SNT|1|1|A|95
6SNT|1|1|G|96

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain ab

60S ribosomal protein L42-A

Chain ap

60S ribosomal protein L28

Chain r

60S ribosomal protein L13-A

Chain w

60S ribosomal protein L18-A