HL_6SNT_028

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_028 not in the Motif Atlas

Geometric match to HL_5TBW_028

Geometric discrepancy: 0.2392

The information below is about HL_5TBW_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6SNT|1|1|G|1266
6SNT|1|1|U|1267
6SNT|1|1|G|1268
6SNT|1|1|U|1269
6SNT|1|1|A|1270
6SNT|1|1|A|1271
6SNT|1|1|C|1272
6SNT|1|1|A|1273
6SNT|1|1|A|1274
6SNT|1|1|C|1275

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains