HL_6SNT_035

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

6SNT|1|1|U|1606, 6SNT|1|1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_035 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.0906

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6SNT|1|1|G|1599
6SNT|1|1|U|1600
6SNT|1|1|U|1601
6SNT|1|1|A|1602
6SNT|1|1|A|1603
6SNT|1|1|G|1604
6SNT|1|1|A|1605
6SNT|1|1|U|1606
6SNT|1|1|U|1607
6SNT|1|1|C|1608

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain aj

60S ribosomal protein L34-A

Chain as

60S ribosomal protein L25

Chain x

60S ribosomal protein L19-A