HL_6SNT_051

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6SNT|1|1|A|2372, 6SNT|1|1|A|2373, 6SNT|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0692

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6SNT|1|1|G|2369
6SNT|1|1|G|2370
6SNT|1|1|G|2371
6SNT|1|1|A|2372
6SNT|1|1|A|2373
6SNT|1|1|C|2374
6SNT|1|1|G|2375
6SNT|1|1|G|2376
6SNT|1|1|G|2377
6SNT|1|1|C|2378

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain al

60S ribosomal protein L32

Chain i

60S ribosomal protein L3