HL_6SNT_053

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

6SNT|1|1|C|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SNT|1|1|A|2535
6SNT|1|1|A|2536
6SNT|1|1|U|2537
6SNT|1|1|U|2538
6SNT|1|1|C|2539
6SNT|1|1|A|2540
6SNT|1|1|U|2541
6SNT|1|1|U|2542
6SNT|1|1|U|2543
6SNT|1|1|U|2544

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain B

40S ribosomal protein S1-A

Chain n

60S ribosomal protein L8-A