HL_6SNT_068

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6SNT|1|1|G|3116, 6SNT|1|1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.06

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6SNT|1|1|C|3110
6SNT|1|1|U|3111
6SNT|1|1|G|3112
6SNT|1|1|A|3113
6SNT|1|1|A|3114
6SNT|1|1|C|3115
6SNT|1|1|G|3116
6SNT|1|1|C|3117
6SNT|1|1|C|3118
6SNT|1|1|U|3119
6SNT|1|1|C|3120
6SNT|1|1|U|3121
6SNT|1|1|A|3122
6SNT|1|1|A|3123
6SNT|1|1|G|3124

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain ad

Ubiquitin-60S ribosomal protein L40

Chain o

60S ribosomal protein L9-A

Chain u

60S ribosomal protein L16-A