HL_6SNT_071

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

6SNT|1|1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_071 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0746

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6SNT|1|1|G|3303
6SNT|1|1|U|3304
6SNT|1|1|A|3305
6SNT|1|1|U|3306
6SNT|1|1|A|3307
6SNT|1|1|C|3308
6SNT|1|1|G|3309
6SNT|1|1|A|3310
6SNT|1|1|C|3311

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain i

60S ribosomal protein L3

Chain v

60S ribosomal protein L17-A