HL_6SNT_072

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUUGUUG

Length

8 nucleotides

Bulged bases

6SNT|1|1|U|3351, 6SNT|1|1|U|3354, 6SNT|1|1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SNT|1|1|C|3349
6SNT|1|1|C|3350
6SNT|1|1|U|3351
6SNT|1|1|U|3352
6SNT|1|1|G|3353
6SNT|1|1|U|3354
6SNT|1|1|U|3355
6SNT|1|1|G|3356

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain I

40S ribosomal protein S8-A

Chain au

60S ribosomal protein L22-A