HL_6SNT_086
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AAUGUAAAUACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SNT_086 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.1224
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6SNT|1|2|A|520
6SNT|1|2|A|521
6SNT|1|2|U|522
6SNT|1|2|G|523
6SNT|1|2|U|524
6SNT|1|2|A|525
6SNT|1|2|A|526
6SNT|1|2|A|527
6SNT|1|2|U|528
6SNT|1|2|A|529
6SNT|1|2|C|530
6SNT|1|2|C|531
6SNT|1|2|U|532
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain E
- 40S ribosomal protein S4-A
- Chain J
- 40S ribosomal protein S9-A
- Chain Y
- 40S ribosomal protein S24-A
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