HL_6SNT_088

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGGCCGGUCGGAUUUCCA

Length

18 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SNT|1|2|U|650
6SNT|1|2|G|651
6SNT|1|2|G|652
6SNT|1|2|C|653
6SNT|1|2|C|654
6SNT|1|2|G|655
6SNT|1|2|G|656
6SNT|1|2|U|657
6SNT|1|2|C|658
6SNT|1|2|G|676
6SNT|1|2|G|677
6SNT|1|2|A|678
6SNT|1|2|U|679
6SNT|1|2|U|680
6SNT|1|2|U|681
6SNT|1|2|C|682
6SNT|1|2|C|683
6SNT|1|2|A|684

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain J

40S ribosomal protein S9-A