HL_6SNT_089

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

6SNT|1|2|C|709, 6SNT|1|2|U|711, 6SNT|1|2|G|714, 6SNT|1|2|C|726

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_089 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2861

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6SNT|1|2|G|703
6SNT|1|2|C|704
6SNT|1|2|U|705
6SNT|1|2|A|706
6SNT|1|2|A|707
6SNT|1|2|C|708
6SNT|1|2|C|709
6SNT|1|2|U|710
6SNT|1|2|U|711
6SNT|1|2|G|712
6SNT|1|2|A|713
6SNT|1|2|G|714
6SNT|1|2|C|726
6SNT|1|2|U|727
6SNT|1|2|U|728
6SNT|1|2|G|729
6SNT|1|2|G|730
6SNT|1|2|C|731
6SNT|1|2|G|732
6SNT|1|2|A|733
6SNT|1|2|A|734
6SNT|1|2|C|735

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain E

40S ribosomal protein S4-A