3D structure

PDB id
6SNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome stalled on SDD1 mRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SNT_098 not in the Motif Atlas
Homologous match to HL_4V88_211
Geometric discrepancy: 0.0992
The information below is about HL_4V88_211
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6SNT|1|2|C|1121
6SNT|1|2|G|1122
6SNT|1|2|C|1123
6SNT|1|2|A|1124
6SNT|1|2|A|1125
6SNT|1|2|G|1126

Current chains

Chain 2
Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain aa
60S ribosomal protein L43-A
Chain ac
L41-A

Coloring options:


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