HL_6SNT_101

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_101 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.1047

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SNT|1|2|A|1296
6SNT|1|2|G|1297
6SNT|1|2|U|1298
6SNT|1|2|G|1299
6SNT|1|2|A|1300
6SNT|1|2|U|1301

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain A

40S ribosomal protein S0-A

Chain C

40S ribosomal protein S2