HL_6SNT_116

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCUICGAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_116 not in the Motif Atlas

Homologous match to HL_9DFC_104

Geometric discrepancy: 0.1427

The information below is about HL_9DFC_104

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6SNT|1|6|G|31
6SNT|1|6|C|32
6SNT|1|6|U|33
6SNT|1|6|I|34
6SNT|1|6|C|35
6SNT|1|6|G|36
6SNT|1|6|A|37
6SNT|1|6|A|38
6SNT|1|6|C|39

Current chains

Chain 6

tRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 5

mRNA

Chain Q

40S ribosomal protein S16-A