HL_6SNT_120
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCCUGAUUUUAUGCAGGC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SNT|1|1|G|1561
6SNT|1|1|C|1562
6SNT|1|1|C|1563
6SNT|1|1|U|1564
6SNT|1|1|G|1565
6SNT|1|1|A|1566
6SNT|1|1|U|1567
6SNT|1|1|U|1568
6SNT|1|1|U|1569
6SNT|1|1|U|1570
6SNT|1|1|A|1571
6SNT|1|1|U|1572
6SNT|1|1|G|1573
6SNT|1|1|C|1574
6SNT|1|1|A|1575
6SNT|1|1|G|1576
6SNT|1|1|G|1577
6SNT|1|1|C|1578
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain as
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L2-A
- Chain n
- 60S ribosomal protein L8-A
Coloring options: