HL_6SNT_121

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_121 not in the Motif Atlas

Geometric match to HL_3IGI_005

Geometric discrepancy: 0.3151

The information below is about HL_3IGI_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

27

Unit IDs

6SNT|1|2|A|829
6SNT|1|2|U|830
6SNT|1|2|U|831
6SNT|1|2|U|832
6SNT|1|2|U|833
6SNT|1|2|G|834
6SNT|1|2|U|835
6SNT|1|2|U|836
6SNT|1|2|G|837
6SNT|1|2|G|838
6SNT|1|2|U|839
6SNT|1|2|U|840
6SNT|1|2|U|841
6SNT|1|2|C|842
6SNT|1|2|U|843

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain G

40S ribosomal protein S6-A

Chain L

40S ribosomal protein S11-A