HL_6SNT_124

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

6SNT|1|1|U|545, 6SNT|1|1|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SNT_124 not in the Motif Atlas

Homologous match to HL_8CRE_012

Geometric discrepancy: 0.5668

The information below is about HL_8CRE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6SNT|1|1|G|542
6SNT|1|1|C|543
6SNT|1|1|C|544
6SNT|1|1|U|545
6SNT|1|1|C|546
6SNT|1|1|G|547
6SNT|1|1|G|548
6SNT|1|1|U|549

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains