HL_6SPB_050

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

6SPB|1|A|C|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPB_050 not in the Motif Atlas

Geometric match to HL_5M3H_001

Geometric discrepancy: 0.3095

The information below is about HL_5M3H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6SPB|1|A|A|2129
6SPB|1|A|C|2130
6SPB|1|A|G|2131
6SPB|1|A|C|2132
6SPB|1|A|C|2133
6SPB|1|A|A|2134
6SPB|1|A|G|2135
6SPB|1|A|U|2136

Current chains

Chain A

23S ribosomal RNA

Nearby chains