HL_6SPB_054
3D structure
- PDB id
- 6SPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CCGGUCGGAAAUCGG
- Length
- 15 nucleotides
- Bulged bases
- 6SPB|1|A|U|2292, 6SPB|1|A|C|2293
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SPB_054 not in the Motif Atlas
- Geometric match to HL_4KR9_003
- Geometric discrepancy: 0.2928
- The information below is about HL_4KR9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_16651.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
6SPB|1|A|C|2288
6SPB|1|A|C|2289
6SPB|1|A|G|2290
6SPB|1|A|G|2291
6SPB|1|A|U|2292
6SPB|1|A|C|2293
6SPB|1|A|G|2294
6SPB|1|A|G|2295
6SPB|1|A|A|2296
6SPB|1|A|A|2297
6SPB|1|A|A|2298
6SPB|1|A|U|2299
6SPB|1|A|C|2300
6SPB|1|A|G|2301
6SPB|1|A|G|2302
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L31
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L5
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