HL_6SPC_009

3D structure

PDB id

6SPC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6SPC|1|a|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPC_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.2452

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

6SPC|1|a|C|336
6SPC|1|a|U|337
6SPC|1|a|A|338
6SPC|1|a|C|339
6SPC|1|a|G|340
6SPC|1|a|G|341

Current chains

Chain a

16S rRNA

Nearby chains