HL_6SPC_018

3D structure

PDB id

6SPC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPC_018 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.0608

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6SPC|1|a|C|856
6SPC|1|a|U|857
6SPC|1|a|A|858
6SPC|1|a|A|859
6SPC|1|a|C|860
6SPC|1|a|G|861

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S5

Chain h

30S ribosomal protein S8