HL_6SPD_004

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAUAAC

Length

6 nucleotides

Bulged bases

6SPD|1|A|U|139, 6SPD|1|A|A|140, 6SPD|1|A|A|141

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_004 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1348

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6SPD|1|A|G|137
6SPD|1|A|A|138
6SPD|1|A|U|139
6SPD|1|A|A|140
6SPD|1|A|A|141
6SPD|1|A|C|142

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23