HL_6SPD_011

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUGAUAGCC

Length

9 nucleotides

Bulged bases

6SPD|1|A|G|323, 6SPD|1|A|A|324, 6SPD|1|A|U|325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_011 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.1447

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

6SPD|1|A|G|321
6SPD|1|A|U|322
6SPD|1|A|G|323
6SPD|1|A|A|324
6SPD|1|A|U|325
6SPD|1|A|A|326
6SPD|1|A|G|327
6SPD|1|A|C|328
6SPD|1|A|C|329

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24