HL_6SPD_012

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCACGAGAAAC

Length

11 nucleotides

Bulged bases

6SPD|1|A|G|377, 6SPD|1|A|A|380

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_012 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.2739

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6SPD|1|A|G|373
6SPD|1|A|C|374
6SPD|1|A|A|375
6SPD|1|A|C|376
6SPD|1|A|G|377
6SPD|1|A|A|378
6SPD|1|A|G|379
6SPD|1|A|A|380
6SPD|1|A|A|381
6SPD|1|A|A|382
6SPD|1|A|C|383

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28