HL_6SPD_018

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUAUAG

Length

7 nucleotides

Bulged bases

6SPD|1|A|U|603, 6SPD|1|A|U|605

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_018 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.1852

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

6SPD|1|A|C|601
6SPD|1|A|G|602
6SPD|1|A|U|603
6SPD|1|A|A|604
6SPD|1|A|U|605
6SPD|1|A|A|606
6SPD|1|A|G|607

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4