HL_6SPD_036

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCGUUGGUUGUC

Length

12 nucleotides

Bulged bases

6SPD|1|A|U|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_036 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.2979

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6SPD|1|A|G|1437
6SPD|1|A|C|1438
6SPD|1|A|G|1439
6SPD|1|A|U|1440
6SPD|1|A|U|1441
6SPD|1|A|G|1442
6SPD|1|A|G|1443
6SPD|1|A|U|1444
6SPD|1|A|U|1445
6SPD|1|A|G|1446
6SPD|1|A|U|1447
6SPD|1|A|C|1448

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17