HL_6SPD_050

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6SPD|1|A|A|2017, 6SPD|1|A|A|2018, 6SPD|1|A|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_050 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.2234

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

6SPD|1|A|G|2014
6SPD|1|A|U|2015
6SPD|1|A|G|2016
6SPD|1|A|A|2017
6SPD|1|A|A|2018
6SPD|1|A|G|2019
6SPD|1|A|A|2020
6SPD|1|A|U|2021
6SPD|1|A|G|2022
6SPD|1|A|C|2023

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain D

50S ribosomal protein L3