HL_6SPD_052

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

6SPD|1|A|C|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_052 not in the Motif Atlas

Geometric match to HL_6AAX_001

Geometric discrepancy: 0.3718

The information below is about HL_6AAX_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6SPD|1|A|C|2130
6SPD|1|A|G|2131
6SPD|1|A|C|2132
6SPD|1|A|C|2133
6SPD|1|A|A|2134
6SPD|1|A|G|2135

Current chains

Chain A

23S ribosomal RNA

Nearby chains