HL_6SPD_068

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

ACUUGAU

Length

7 nucleotides

Bulged bases

6SPD|1|A|G|2785

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_068 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.4888

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6SPD|1|A|A|2781
6SPD|1|A|C|2782
6SPD|1|A|U|2783
6SPD|1|A|U|2784
6SPD|1|A|G|2785
6SPD|1|A|A|2786
6SPD|1|A|U|2787

Current chains

Chain A

23S ribosomal RNA

Nearby chains