HL_6SPD_069

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAAGACUAC

Length

9 nucleotides

Bulged bases

6SPD|1|A|A|2806

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_069 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.1422

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6SPD|1|A|G|2805
6SPD|1|A|A|2806
6SPD|1|A|A|2807
6SPD|1|A|G|2808
6SPD|1|A|A|2809
6SPD|1|A|C|2810
6SPD|1|A|U|2811
6SPD|1|A|A|2812
6SPD|1|A|C|2813

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17