HL_6SVS_004

3D structure

PDB id

6SVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of U:A-U-rich RNA triple helix with 11 consecutive base triples

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UGGCCUUUCUUAAAAAAAAA

Length

20 nucleotides

Bulged bases

6SVS|1|B|A|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SVS_004 not in the Motif Atlas

Geometric match to HL_6SVS_002

Geometric discrepancy: 0.1302

The information below is about HL_6SVS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00317.1

Basepair signature

cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6SVS|1|B|U|50
6SVS|1|B|G|51
6SVS|1|B|G|52
6SVS|1|B|C|53
6SVS|1|B|C|54
6SVS|1|B|U|55
6SVS|1|B|U|56
6SVS|1|B|U|57
6SVS|1|B|C|58
6SVS|1|B|U|59
6SVS|1|B|U|60
6SVS|1|B|A|61
6SVS|1|B|A|62
6SVS|1|B|A|63
6SVS|1|B|A|64
6SVS|1|B|A|65
6SVS|1|B|A|66
6SVS|1|B|A|67
6SVS|1|B|A|68
6SVS|1|B|A|69

Current chains

Chain B

RNA (79-mer)

Nearby chains