HL_6SW9_006

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGGUAACGGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|G|267
6SW9|1|2|G|268
6SW9|1|2|G|269
6SW9|1|2|U|270
6SW9|1|2|A|271
6SW9|1|2|A|272
6SW9|1|2|C|273
6SW9|1|2|G|274
6SW9|1|2|G|275
6SW9|1|2|C|276
6SW9|1|2|C|277

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain J

30S ribosomal protein S8e

Chain R

30S ribosomal protein S17