HL_6SW9_020
3D structure
- PDB id
- 6SW9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAU(B8H)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 6SW9|1|2|A|940, 6SW9|1|2|G|943
- QA status
- Modified nucleotides: B8H, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SW9|1|2|G|935
6SW9|1|2|A|936
6SW9|1|2|U|937
6SW9|1|2|B8H|938
6SW9|1|2|5MC|939
6SW9|1|2|A|940
6SW9|1|2|A|941
6SW9|1|2|C|942
6SW9|1|2|G|943
6SW9|1|2|C|944
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain K
- 30S ribosomal protein S9
- Chain L
- 30S ribosomal protein S10
- Chain O
- 30S ribosomal protein S13
- Chain P
- 30S ribosomal protein S14 type Z
- Chain T
- 30S ribosomal protein S19
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