HL_6SW9_030

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAGCCUGG(H2U)AG

Length

11 nucleotides

Bulged bases

6SW9|1|4|C|16, 6SW9|1|4|G|18, 6SW9|1|4|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|4|C|13
6SW9|1|4|A|14
6SW9|1|4|G|15
6SW9|1|4|C|16
6SW9|1|4|C|17
6SW9|1|4|U|17|||A
6SW9|1|4|G|18
6SW9|1|4|G|19
6SW9|1|4|H2U|20
6SW9|1|4|A|21
6SW9|1|4|G|22

Current chains

Chain 4

initiator Met-tRNA fMet from E. coli (A1U72 variant)

Nearby chains